Title / Titel: Author / Autor: Source / Quelle: Language / Sprache:

Knowledge Acquisition Focused Cooperative Development of Bio-Ontologies: A Case Study with BIO2Me Mainz, D., Paulsen, I., Mainz, I., Weller, K., Kohl, J., & von Haeseler, A. M. Elloumi, et al. (Eds.), Communications in Computer and Information Science: Vol. 13. Bioinformatics Research and Development. Second International Conference, BIRD 2008. Vienna, Austria (pp. 258-272). Berlin, Heidelberg: Springer. English / Englisch

 

Knowledge Acquisition Focused Cooperative Development of Bio-Ontologies: A Case Study with BIO2Me
We diagnose the need for collaborative ontology engineering approaches exemplified by the life sciences. With BIO2Me we present our case study, a structured knowledge base in the field of bioinformatics tools and methods. We point out the difficulties in knowledge elicitation and concerning the cooperation of domain experts and ontology designers we experienced during the engineering process of our ontology. Finally, we demonstrate our solutions for an ontology developing environment by discussing some aspects such as publication relevant tagging and semantically binding wiki pages with ontologies to integrate domain experts into the ontology development process.

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Dominic Mainz
Heinrich-Heine-University
Universitaetsstr. 1
D - 40225 Duesseldorf
Germany

Ingo Paulsen
Heinrich-Heine-University
Universitaetsstr. 1
D - 40225 Duesseldorf
Germany

Indra Mainz
Heinrich-Heine-University Duesseldorf
Universitätsstr. 1
D - 40225 Duesseldorf
Germany

Katrin Weller
Dept. of Information Science
Heinrich-Heine-University Duesseldorf
Universitätsstr. 1
D - 40225 Duesseldorf
Germany
http://www.phil-fak.uni-duesseldorf.de/infowiss/content/mitarbeiter/weller.php

Jochen Kohl
Heinrich-Heine-University Duesseldorf
Universitätsstr. 1
D - 40225 Duesseldorf
Germany

Arndt von Haeseler
Center for Integrative Bioinformatics Vienna
Max F. Perutz Laboratories
University of Vienna
Medical University of Vienna and Veterinary University of Vienna
Dr. Bohr-Gasse 9
A - 1030 Vienna Austria

Mail:
Dominic Mainz: mainzd@uni-duesseldorf.de
Ingo Paulsen: paulseni@uni-duesseldorf.de
Indra Mainz: mainzi@biophys.uni-duesseldorf.de
Katrin Weller: weller@uni-duesseldorf.de
Jochen Kohl: kohlj@uni-duesseldorf.de
Arndt von Haeseler: arndt.von.haeseler@univie.ac.at